Publication list of Andrey Gurtovenko

     

    1. D. A. Kondinskaia and A. A. Gurtovenko
      Supramolecular Complexes of DNA with Cationic Polymers: The Effect of Polymer Concentration
      submitted (2017).

    2. A. Yu. Kostritskii, D. A. Tolmachev, N. V. Lukasheva, and A. A. Gurtovenko
      Molecular-Level Insight into the Interaction of Phospholipid Bilayers with Cellulose
      Langmuir 33, 12793-12803 (2017). On-line

    3. A. Polley, A. Orlowski, R. Danne, A. A. Gurtovenko, J. Bernardino de la Serna, C. Eggeling,
      S. J. Davis, T. Rog, and I. Vattulainen
      Glycosylation and Lipids Working in Concert Direct CD2 Ectodomain Orientation and Presentation
      Journal of Physical Chemistry Letters 8, 1060-1066 (2017). On-line

    4. D. A. Khomich, A. M. Nesterenko, A. Yu. Kostritskii, D. A. Kondinskaia, Yu. A. Ermakov, and A. A. Gurtovenko
      Independent Adsorption of Monovalent Cations and Cationic Polymers at PE/PG Lipid Membranes
      Journal of Physics: Conference Series 794, 012010 (2017). On-line

    5. S. G. Falkovich, H. Martinez-Seara, A. M. Nesterenko, I. Vattulainen, and A. A. Gurtovenko
      What Can We Learn about Cholesterol's Transmembrane Distribution Based on Cholesterol-Induced Changes
      in Membrane Dipole Potential?
      Journal of Physical Chemistry Letters 7, 4585-4590 (2016). On-line

    6. A. Yu. Kostritskii, D. A. Kondinskaia, A. M. Nesterenko, and A. A. Gurtovenko
      Adsorption of Synthetic Cationic Polymers on Model Phospholipid Membranes: Insight from Atomic-Scale
      Molecular Dynamics Simulations
      Langmuir 32, 10402-10414 (2016). On-line

    7. D. A. Kondinskaia, A. Yu. Kostritskii, A. M. Nesterenko, A. Yu. Antipina, and A. A. Gurtovenko
      Atomic-Scale Molecular Dynamics Simulations of DNA-Polycation Complexes: Two Distinct Binding Patterns
      Journal of Physical Chemistry B 120, 6546-6554 (2016). On-line

    8. A. Yu. Antipina and A. A. Gurtovenko
      Molecular-Level Insight into the Interactions of DNA with Phospholipid Bilayers: Barriers and Triggers
      RSC Advances 6, 36425 - 36432 (2016). On-line

    9. V. M. Nazarychev, A. V. Lyulin, S. V. Larin, A. A. Gurtovenko, J. M. Kenny, and S. V. Lyulin
      Molecular Dynamics Simulations of Uniaxial Deformation of Thermoplastic Polyimides
      Soft Matter 12, 3972 - 3981 (2016). On-line

    10. A. Yu. Antipina and A. A. Gurtovenko
      Molecular Mechanism of Calcium-Induced Adsorption of DNA on Zwitterionic Phospholipid Membranes
      Journal of Physical Chemistry B 119, 6638 - 6645 (2015).
      The paper is featured on the cover of issue 22 (v. 119) of the journal. On-line

    11. V. M. Nazarychev, S. V. Larin, A. V. Yakimansky, N. V. Lukasheva, A. A. Gurtovenko,
      I. V. Gofman, V. E. Yudin, V. M. Svetlichnyi, J. M. Kenny, and S. V. Lyulin
      Parameterization of Electrostatic Interactions for Molecular Dynamics Simulations of Heterocyclic Polymers
      Journal of Polymer Science, Part B 53, 912 - 923 (2015). On-line

    12. F. Furstenberg, A. A. Gurtovenko, M. Dolgushev, and A. Blumen
      Molecular Dynamics Simulations of Hyperbranched PAMAM Vicsek Fractals
      Macromolecular Theory and Simulations 24, 100 - 109 (2015). On-line

    13. A. A. Gurtovenko and A.S. Lyulina
      Electroporation of Asymmetric Phospholipid Membranes
      Journal of Physical Chemistry B 118, 9909 - 9918 (2014).
      The paper is featured on the cover of issue 33 (v. 118) of the journal. On-line

    14. E. Heikkila, H. Martinez-Seara, A. A. Gurtovenko, I. Vattulainen, and J. Akola
      Atomistic Simulations of Anionic Au144(SR)60 Nanoparticles Interacting with Asymmetric
      Model Lipid Membranes
      Biochimica et Biophysica Acta (BBA) - Biomembranes 1838, 2852 - 2860 (2014). On-line

    15. E. Heikkila, H. Martinez-Seara, A. A. Gurtovenko, M. Javanainen, H. Hakkinen, I. Vattulainen, and J. Akola
      Cationic Au Nanoparticle Binding with Plasma Membrane-Like Lipid Bilayers: Potential Mechanism
      for Spontaneous Permeation to Cells Revealed by Atomistic Simulations
      Journal of Physical Chemistry C 118, 11131 - 11141 (2014). On-line

    16. T. Nieminen, M. Javanainen, R. Danne, T. Rog, A. A. Gurtovenko, and I. Vattulainen
      Flip-Flops of Lipids in the Absence of Atp: Role of Membrane Proteins
      Biophysical Journal 106, 705a (2014). On-line

    17. S. G. Falkovich, V. M. Nazarychev, S. V. Larin, A. A. Gurtovenko, N. V. Lukasheva, S. V. Lyulin,
      and A. V. Lyulin
      Influence of the Electrostatic Interactions on Thermophysical Properties of Polyimides:
      Molecular-Dynamics Simulations
      Journal of Polymer Science, Part B 52, 640 - 646 (2014).
      The paper is featured on the cover of issue 9 (v. 52) of the journal. On-line

    18. S. V. Lyulin, S. V. Larin, A. A. Gurtovenko, V. M. Nazarychev, S. G. Falkovich, V. E. Yudin,
      V. M. Svetlichnyi, I. V. Gofman, and A. V. Lyulin
      Thermal Properties of Bulk Polyimides: Insights from Computer Modeling versus Experiment
      Soft Matter 10, 1224 - 1232 (2014). On-line

    19. S. V. Larin, S. G. Falkovich, V. M. Nazarychev, A. A. Gurtovenko, A. V. Lyulin and S. V. Lyulin
      Molecular-Dynamics Simulation of Polyimide Matrix Pre-Crystallization near the Surface of a Single-Walled
      Carbon Nanotube
      RSC Advances 4, 830 - 844 (2014). On-line

    20. S. G. Falkovich, S. V. Larin, V. M. Nazarychev, I. V. Volgin, A. A. Gurtovenko, A. V. Lyulin, and S. V. Lyulin
      Computer Simulation of the Heat-Resistant Polyimides ULTEM(TM) and EXTEM(TM) with the use of
      GROMOS53a6 and AMBER99 Force Fields
      Polymer Science Series A 56, 558 - 567 (2014). On-line

    21. S. V. Lyulin, A. A. Gurtovenko, S. V. Larin, V. M. Nazarychev, and A. V. Lyulin
      Microsecond Atomic-Scale Molecular Dynamics Simulations of Polyimides
      Macromolecules 46, 6357 - 6363 (2013). On-line

    22. E. Heikkila, A. Gurtovenko, H. Martinez-Seara, H. Hakkinen, I. Vattulainen, and J. Akola
      Atomistic Simulations of Functional Gold Nanoparticles Au144(Sr)60 Interacting with Membranes
      Biophysical Journal 104, 664a (2013). On-line

    23. H. Martinez-Seara, R. Danne, T. Rog, I. Vattulainen, and A. Gurtovenko
      Structure of Glycocalyx
      Biophysical Journal 104, 251a (2013). On-line

    24. S. V. Lyulin, S. V. Larin, A. A. Gurtovenko, N. V. Lukasheva, V. E. Yudin, V. M. Svetlichnyi,
      and A. V. Lyulin
      Effect of the SO2 Group in the Diamine Fragment of Polyimides on Their Structural, Thermophysical,
      and Mechanical Properties
      Polymer Science Series A 54, 631 - 643 (2012). On-line

    25. E. Heikkila, A. A. Gurtovenko, H. Martinez-Seara, H. Hakkinen, I. Vattulainen, and J. Akola
      Atomistic Simulations of Functional Au144(SR)60 Gold Nanoparticles in Aqueous Environment
      Journal of Physical Chemistry C 116, 9805 9815 (2012). On-line

    26. W. Zhao, A. A. Gurtovenko, I. Vattulainen, and M. Karttunen
      Cationic DMPC/DOTAP Lipid Bilayers: Atomistic Insight for Structure and Dynamics
      Journal of Physical Chemistry B 116, 269 276 (2012). On-line

    27. A. A. Gurtovenko
      Dynamic Properties of Polymer Systems with Complex Topology. Theory and Computer Modeling
      Dr.Sci. Dissertation, Institute of Macromolecular Compounds RAS, St.Petersburg,
      Russia, 379 p. (2011). On-line

    28. M. Berenguer, J. Z. Zhang, M. C. Bruce, L. Martinez, T. Gonzalez, A. A. Gurtovenko,
      T. Xu, Y. Le Marchand-Brustel, and R. Govers
      Dimethyl Sulfoxide Enhances GLUT4 Translocation through a Reduction in GLUT4 Endocytosis
      in Insulin-Stimulated 3T3-L1 Adipocytes
      Biochimie 93, 697 - 709 (2011). On-line

    29. A. A. Gurtovenko, J. Anwar, and I. Vattulainen
      Defect-Mediated Trafficking across Cell Membranes: Insights from In Silico Modeling
      Chemical Reviews 110, 6077 - 6103 (2010). On-line

    30. A. A. Gurtovenko and I. Vattulainen
      Calculation of the Electrostatic Potential of Lipid Bilayers from Molecular Dynamics
      Simulations: Methodological Issues
      Journal of Chemical Physics 130, 215107 (2009). On-line

    31. M. S. Miettinen, A. A. Gurtovenko, I. Vattulainen, and M. Karttunen
      Ion Dynamics in Cationic Lipid Bilayer Systems in Saline Solutions
      Journal of Physical Chemistry B 113, 9226 – 9234 (2009). On-line

    32. A. A. Gurtovenko and I. Vattulainen
      Collective Dynamics in Lipid Membranes: From Pore Formation to Flip-Flops
      Biomembrane Frontiers: Nanostructures, Models, and the Design of Life
      Handbook of Modern Biophysics, R. Faller, M. L. Longo, S. H. Risbud and T. Jue (eds.)
      Humana Press, 2009, pp 121 - 139. On-line

    33. A. A. Gurtovenko and I. Vattulainen
      Intrinsic Potential of Cell Membranes: Opposite Effects of Lipid Transmembrane Asymmetry
      and Asymmetric Salt Ion Distribution
      Journal of Physical Chemistry B 113, 7194 - 7198 (2009). On-line

    34. A.A. Gurtovenko and J. Anwar
      Interaction of Ethanol with Biological Membranes: The Formation of Non-Bilayer Structures
      within the Membrane Interior and their Significance
      Journal of Physical Chemistry B 113, 1983 - 1992 (2009). On-line

    35. A. A. Gurtovenko, O. I. Onike, and J. Anwar
      Chemically-Induced Phospholipid Translocation Across Biological Membranes
      Langmuir 24, 9656 - 9660 (2008). On-line

    36. S. V. Lyulin, I. Vattulainen, and A. A. Gurtovenko
      Complexes Comprised of Charged Dendrimers, Linear Polyelectrolytes, and Counter-
      Ions: Insight through Coarse-Grained Molecular Dynamics Simulations
      Macromolecules 41, 4961 - 4968 (2008). On-line

    37. A.A. Gurtovenko and J. Anwar
      Breaching the Skin
      World Pharmaceutical Frontiers, March 2008, pp 46 - 49. On-line

    38. W. Zhao, T. Rog, A. A. Gurtovenko, I. Vattulainen, and M. Karttunen
      Role of Phosphatidylglycerols in the Stability of Bacterial Membranes
      Biochimie 90, 930 - 938 (2008). On-line

    39. A. A. Gurtovenko and I. Vattulainen
      Membrane Potential and Electrostatics of Phospholipid Bilayers with Asymmetric
      Transmembrane Distribution of Anionic Lipids
      Journal of Physical Chemistry B 112, 4629 - 4634 (2008). On-line

    40. I. M. Degtyarenko, K. J. Jalkanen, A. A. Gurtovenko, and R. M. Nieminen
      The Crystalline and Aqueous Forms of L-alanine Zwitterion:
      A Density-Functional Computational Study
      Journal of Computational and Theoretical Nanoscience 5, 277 - 285 (2008). On-line

    41. A. A. Gurtovenko and I. Vattulainen
      Effect of NaCl and KCl on Phosphatidylcholine and Phosphatidylethanolamine
      Lipid Membranes: Insight from Atomic-Scale Simulations for Understanding
      Salt-Induced Effects in the Plasma Membrane
      Journal of Physical Chemistry B 112, 1953-1962 (2008). On-line

    42. A. A. Gurtovenko and I. Vattulainen
      The Molecular Mechanism of Lipid Flip-Flops
      Journal of Physical Chemistry B 111, 13554 - 13559 (2007). On-line

    43. A. A. Gurtovenko and J. Anwar
      Ion Transport through Chemically-Induced Pores in Protein-Free Phospholipid
      Membranes
      Journal of Physical Chemistry B
      111, 13379 - 13382 (2007). On-line

    44. A. A. Gurtovenko and J. Anwar
      Modulating the Structure and Properties of Cell Membranes: The Molecular Mechanism
      of Action of Dimethyl Sulfoxide
      Journal of Physical Chemistry B 111, 10453 - 10460 (2007).
      The paper is featured on the cover of issue 35 (v. 111) of the journal. On-line

    45. A. A. Gurtovenko and I. Vattulainen
      Lipid Transmembrane Asymmetry and Intrinsic Membrane Potential: Two Sides
      of the Same Coin
      Journal of the American Chemical Society 129, 5358 - 5359 (2007). On-line

    46. I. M. Degtyarenko, K. J. Jalkanen, A. A. Gurtovenko, and R. M. Nieminen
      L-alanine in a Droplet of Water: A Density-Functional Molecular Dynamics Study
      Journal of Physical Chemistry B 111, 4227 - 4234 (2007). On-line

    47. A. A. Gurtovenko and I. Vattulainen
      Ion Leakage Through Transient Water Pores In Protein-Free Lipid Membranes
      Driven by Transmembrane Ionic Charge Imbalance
      Biophysical Journal 92, 1878 - 1890 (2007). On-line

    48. W. Zhao, T. Rog, A. A. Gurtovenko, I. Vattulainen, and M. Karttunen
      Atomic-Scale Structure and Electrostatics of Anionic POPG Lipid Bilayers with
      Na+ Counterions
      Biophysical Journal
      92, 1114 - 1124 (2007). On-line

    49. A. A. Gurtovenko, S. V. Lyulin, M. Karttunen, and I. Vattulainen
      Molecular Dynamics Study of Charged Dendrimers in Salt-Free Solution: Effect
      of Counter-Ions
      Journal of Chemical Physics 124, 094904 (2006). On-line

    50. A. A. Gurtovenko and I. Vattulainen
      Molecular Dynamics Studies of Spontaneous Pore Formation and Ion Transport
      Through Lipid Membranes due to Cationic Electrochemical Gradient
      Biophysical Journal 90, 405A (2006).

    51. A. A. Gurtovenko and I. Vattulainen
      Pore Formation Coupled to Ion Transport through Lipid Membranes as Induced
      by Transmembrane Ionic Charge Imbalance: Atomistic Molecular Dynamics Study
      Journal of the American Chemical Society 127, 17570 - 17571 (2005). On-line

    52. A. A. Gurtovenko, M. Miettinen, M. Karttunen, and I. Vattulainen
      Effect of Monovalent Salt on Cationic Lipid Membranes as Revealed by Molecular
      Dynamics Simulations
      Journal of Physical Chemistry B
      109, 21126 - 21134 (2005). On-line

    53. M. Kupiainen, E. Falck, S. Ollila, A. A. Gurtovenko, M. T. Hyvonen, M. Patra,
      M. Karttunen, and I. Vattulainen
      Free Volume Properties of Sphingomyelin, DMPC, DPPC, and PLPC Bilayers
      Journal of Computational and Theoretical Nanoscience 2, 401 - 413 (2005). On-line

    54. A. A. Gurtovenko and A. Blumen
      Generalized Gaussian Structures: Models for Polymer Systems with Complex
      Topology
      Advances in Polymer Science 182, 171 - 282 (2005). On-line

    55. A. A. Gurtovenko
      Asymmetry of Lipid Bilayers Induced by Monovalent Salt: Atomistic Molecular
      Dynamics Study
      Journal of Chemical Physics 122, 244902 (2005). On-line

    56. A. Gurtovenko, M. Miettinen, M. Karttunen, and I. Vattulainen
      Atomistic Simulations of Cationic Lipid Membranes: Effect of Salt
      Biophysical Journal 88, 420A (2005).

    57. A. A. Gurtovenko, M. Patra, M. Karttunen, and I. Vattulainen
      Cationic DMPC/DMTAP Lipid Bilayers: Molecular Dynamics Study
      Biophysical Journal 86, 3461 - 3472 (2004). On-line

    58. C. Satmarel, A. A. Gurtovenko, and A. Blumen
      Relaxation of Copolymeric Dendrimers Built from Alternating Monomers
      Macromolecular Theory and Simulations 13, 487 - 496 (2004). On-line

    59. A. A. Gurtovenko, D. A. Markelov, Yu. Ya. Gotlib, and A. Blumen
      Dynamics of Dendrimer-Based Polymer Networks
      Journal of Chemical Physics 119, 7579 - 7590 (2003). On-line

    60. Yu. Ya. Gotlib, A. A. Gurtovenko, I. A. Torchinskii, V. A. Shevelev, and V. P. Toshchevikov
      The Relaxation Spectra of Polymer Networks with Different Types of Topology,
      Ordering, Heterogeneity
      Macromolecular Symposia 191, 131 - 139 (2003). On-line

    61. C. Satmarel, A. A. Gurtovenko, and A. Blumen
      Viscoelastic Relaxation of Cross-Linked, Alternating Copolymers in the
      Free-Draining Limit
      Macromolecules, 36, 486 - 494 (2003). On-line

    62. A. A. Gurtovenko, Yu. Ya. Gotlib, and A. Blumen
      Rouse Dynamics of Polymer Networks Bearing Dendritic Wedges
      Macromolecules, 35, 7481 - 7491 (2002). On-line

    63. A. A. Gurtovenko and A. Blumen
      Response of Disordered Polymer Networks to External Fields: Regular Lattice
      Built from Complex Subunits
      Macromolecules
      35, 3288 - 3295 (2002). On-line

    64. A. Blumen, A. A. Gurtovenko, and S. Jespersen
      Anomalous Diffusion and Relaxation in Macromolecular Systems
      Journal of Non-Crystalline Solids 305, 71 - 80 (2002). On-line

    65. A. Blumen, A. A. Gurtovenko, and S. Jespersen
      Anomalous Dynamics of Model Polymer Systems
      Journal of Luminescence 94, 437 - 440 (2001). On-line

    66. A. A. Gurtovenko and Yu. Ya. Gotlib
      Dynamics of Inhomogeneous Cross-Linked Polymers Consisting of
      Domains of Different Sizes
      Journal of Chemical Physics 115, 6785 - 6793 (2001). On-line

    67. A. A. Gurtovenko and A. Blumen
      Relaxation of Disordered Polymer Networks: Regular Lattice Made up of
      Small-World Rouse Networks
      Journal of Chemical Physics 115, 4924 - 4929 (2001). On-line

    68. Yu. Ya. Gotlib, A. A. Gurtovenko, and H.-G. Kilian
      Relaxation Modulus of Heterogeneous Polymer Networks with the Domain Structure
      Polymer Science, Ser. A, 43, 308 - 314 (2001)
      (translated from Vysokomol Soedin. (Russia), Ser. A, 43, 496 (2001)).

    69. Yu. Ya. Gotlib and A. A. Gurtovenko
      Unsolved Problems of Theory of Dynamics in Homogeneous and Heterogeneous
      Polymer Networks
      Macromolecular Symposia 171, 69 - 77 (2001). On-line

    70. A. A. Gurtovenko, Yu. Ya. Gotlib, and H.-G. Kilian
      Viscoelastic Dynamic Properties of Heterogeneous Polymer Networks with Domain
      Structure
      Macromolecular Theory and Simulations 9, 388 - 397 (2000). On-line

    71. A. A. Gurtovenko and Yu. Ya. Gotlib
      Viscoelastic Dynamic Properties of Meshlike Polymer Networks: Contributions of
      Intra- and Interchain Relaxation Processes
      Macromolecules
      33, 6578 - 6587 (2000). On-line

    72. A. A. Gurtovenko and Yu. Ya. Gotlib
      Theory of Relaxation Properties of Two-Dimensional Polymer Networks, 2. Local
      Dynamic Characteristics
      Macromolecular Theory and Simulations 9, 416 - 427 (2000). On-line

    73. Yu. Ya. Gotlib and A. A. Gurtovenko
      Theory of Relaxation Properties of Two-Dimensional Polymer Networks, 1. Normal
      Modes and Relaxation Times
      Macromolecular Theory and Simulations
      9, 407 - 415 (2000). On-line

    74. Yu. Ya. Gotlib and A. A. Gurtovenko
      Theory of Long-Scale Cooperative Relaxation of Polymer Networks. Hydrodynamic
      Interaction Effects
      Journal of Computer-Aided Materials Design
      7, 11 - 23 (2000). On-line

    75. A. A. Gurtovenko and Yu. Ya. Gotlib
      Intra- and Interchain Relaxation Processes in Meshlike Polymer Networks
      Macromolecules 31, 5756 - 5770 (1998). On-line

    76. Yu. Gotlib, A. Gurtovenko, and G. Golovachev
      The Theory of Viscoelastic Relaxation Properties of Polymer Networks with Interchain
      Friction and Fixed Average Volume
      In Chemical and Physical Networks, Eds. K. te Nijenhuis and W. Mijs, The Wiley
      Polymer Networks Group Review Series, Volume One; John Wiley & Sons:Chichester, U.K.,
      1998, Chapter 39, p. 505. On-line

    77. Yu. Ya. Gotlib and A. A. Gurtovenko
      The Model Theory of Viscoelastic Relaxation Properties of Bulk Cross-Linked Polymers.
      Interchain Friction Effects
      Macromolecular Theory and Simulations 6, 523 - 551 (1997). On-line

    78. Yu. Ya. Gotlib and A. A. Gurtovenko
      Dielectric Relaxation of Polymer Networks Built from Macromolecules with Dipole Moment
      Directed Along the End-To-End Chain Vector
      Macromolecular Theory and Simulations
      5, 969 - 986 (1996). On-line

    79. Yu. Ya. Gotlib and A. A. Gurtovenko On the Theory of Dielectric Relaxation of Polymer Networks
      Composed of Polar Macromolecules Possessing Longitudinal Component of Dipole Moment
      Polymer Science
      , Ser. A, 38, 360 (1996) (translated from Vysokomol. Soedin. (Russia),
      Ser. A, 38, 615 - 620 (1996)).